[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 156 items for (author: patel & ab)

EMDB-42455:
Candidatus Methanomethylophilus alvus tRNAPyl in A-site of ribosome
Method: single particle / : Krahn N, Zhang J, Melnikov SV, Tharp JM, Villa A, Patel A, Howard RJ, Gabir H, Patel TR, Stetefeld J, Puglisi J, Soll D

PDB-8upt:
Candidatus Methanomethylophilus alvus tRNAPyl in A-site of ribosome
Method: single particle / : Krahn N, Zhang J, Melnikov SV, Tharp JM, Villa A, Patel A, Howard RJ, Gabir H, Patel TR, Stetefeld J, Puglisi J, Soll D

EMDB-29875:
Rpd3L Lobe II
Method: single particle / : Patel AB, Radhakrishnan I, He Y

EMDB-29876:
Rpd3L Lobe I
Method: single particle / : Patel AB, Radhakrishnan I, He Y

EMDB-29892:
Structure of the yeast (HDAC) Rpd3L complex
Method: single particle / : Patel AB, Radhakrishnan I, He Y

EMDB-28818:
Structure of yeast F1-ATPase determined with 100 micromolar cruentaren A
Method: single particle / : Guo H, Rubinstein JL

EMDB-28819:
Structure of yeast F1-ATPase determined with 25 micromolar cruentaren A
Method: single particle / : Guo H, Rubinstein JL

PDB-8f2k:
Structure of yeast F1-ATPase determined with 100 micromolar cruentaren A
Method: single particle / : Guo H, Rubinstein JL

EMDB-15143:
H1-bound palindromic nucleosome, state 4
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15144:
H1-bound palindromic nucleosome, state 3
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15146:
H1-bound palindromic nucleosome, state 2
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15147:
H1-bound palindromic nucleosome, state 5
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15156:
H1-bound palindromic nucleosome, state 6
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15168:
H1-free palindromic nucleosome, state A
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15169:
H1-free palindromic nucleosome, state B
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Mohideen-Abdul K, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15170:
H1-free palindromic nucleosome, state C
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15171:
H1-free palindromic nucleosome, state D
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15172:
H1-free palindromic nucleosome, state E
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15173:
H1-free palindromic nucleosome, state F
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-15232:
H1-bound palindromic nucleosome, state 1
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

PDB-8aag:
H1-bound palindromic nucleosome, state 1
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

EMDB-28563:
NuA4 core
Method: single particle / : Patel AB, Zukin SA, Nogales E

EMDB-28565:
NuA4 FATKIN
Method: single particle / : Patel AB, Zukin SA, Nogales E

EMDB-28566:
NuA4 HEAT
Method: single particle / : Patel AB, Zukin SA, Nogales E

EMDB-28567:
NuA4 HEAT bottom
Method: single particle / : Patel AB, Zukin SA, Nogales E

EMDB-28568:
NuA4 HEAT top
Method: single particle / : Patel AB, Zukin SA, Nogales E

EMDB-28569:
NuA4 HEAT middle
Method: single particle / : Patel AB, Zukin SA, Nogales E

EMDB-28575:
Structure of the Yeast NuA4 Histone Acetyltransferase Complex
Method: single particle / : Patel AB, Zukin SA, Nogales E

EMDB-27254:
SARS-CoV-2 Spike RBD in complex with DMAbs 2130 and 2196
Method: single particle / : Du J, Cui J, Pallesen J

EMDB-27255:
SARS-CoV-2 Spike RBD in complex with DMAb 2196
Method: single particle / : Du J, Cui J, Pallesen J

PDB-8d8q:
SARS-CoV-2 Spike RBD in complex with DMAbs 2130 and 2196
Method: single particle / : Du J, Cui J, Pallesen J

PDB-8d8r:
SARS-CoV-2 Spike RBD in complex with DMAb 2196
Method: single particle / : Du J, Cui J, Pallesen J

EMDB-25376:
BG505.MD39TS Env trimer in complex with Fab from antibody C05
Method: single particle / : Moore A, Du J, Xu Z, Walker S, Kulp DW, Pallesen J

PDB-7sq1:
BG505.MD39TS Env trimer in complex with Fab from antibody C05
Method: single particle / : Moore A, Du J, Xu Z, Walker S, Kulp DW, Pallesen J

EMDB-23091:
Reelin central fragment repeats 3-6, dimer
Method: subtomogram averaging / : Dai W, Chen M, Kuang X, Huynh K, D'Arcangelo G, Turk LS, Comoletti D

EMDB-23393:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C601
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-23394:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C603
Method: single particle / : Yang Z, Barnes CO, Bjorkman PJ

EMDB-23395:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C643
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-23396:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C663
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-23397:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C666
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-23398:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C669
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-23399:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C670
Method: single particle / : Yang Z, Barnes CO, Bjorkman PJ

EMDB-22829:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

PDB-7kdt:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

EMDB-22352:
Structure of SARS-CoV-2 3Q-2P full-length prefusion spike trimer (C3 symmetry)
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-22353:
Structure of SARS-CoV-2 3Q-2P full-length prefusion trimer (C1 symmetry)
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-22354:
Structure of SARS-CoV-2 3Q-2P full-length dimers of spike trimers
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-22355:
Structure of SARS-CoV-2 3Q-2P full-length trimer of spike trimers
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-22356:
Structure of SARS-CoV-2 3Q full-length prefusion trimer
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

PDB-7jji:
Structure of SARS-CoV-2 3Q-2P full-length prefusion spike trimer (C3 symmetry)
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more